SE3320138

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7603
  • citrus sinensis
  • SE3320138
  • Mutator
  • M32
  • chr4:15945768-15946202
  • TTATTGCAA
  • TTGCAAGGGAAATTATCATTCATATACCCTATATTTGTTCTGTTATAAAAAATACTACAACACTTTGAGGGTATATCAATCGTCCACCCTTAGTTGACAAAATGTATCAGCCGACCACCAAACCGTTAGTTGCCGTTTGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTA     ---               CA        ATA    TT       A                         A                 T          A         C                    C       AAGTTAACGGA T    -   AATTGACGATTTTACTCTTAAAAATTATCACGTGTATACCCTTAAATTCTCTTTTTATC
   TTGCA   AGGGAAATTATCATT  TATACCCT   TTTG  CTGTTAT AAAAATACTACAACACTTTGAGGGT TATCAATCGTCCACCCT AGTTGACAAA TGTATCAGC GACCACCAAACCGTTAGTTG CGTTTGA           G TACA GTG                                                           
   |||||   |||||||||||||||  ||||||||   ||||  ||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||| |||||||           | |||| |||                                                           A
   AACGT   TCCCTTTAATAGTAA  ATATGGGA   AAAT  GGTAATA TTTTTATGATGTTGTGAAACTCCCA ATAGTTAGCAGGTGGGA TCAACTGTTT ACATAGTTG CTGGTGGTTTGGCAATCAAC GCAAATT           A TACT CTG                                                           
        TAT               AC        ATC    GT       G                         C                 T          C         A                    A       ----------C -    A   CAGTCTTCCCATTAAACCAGAAAAGTATACTATGTTCACTATTAAATTCCCATATGTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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