SE3320148

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7613
  • citrus sinensis
  • SE3320148
  • Mutator
  • M32
  • chr1:10912650-10913105
  • TATAAATTA
  • TAGGGAAATTATCATTCGTATACCCTATATTTACTCTGTTATTAAAAATACTACAACACTTTTAGGGTGTATTAATCGTCCACCCAAAATTGACAAAACCTATC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATAAAT                   A      ATA             T             CAC   T             C       CA  A         CC    TACCGACC            GCTA         ------A       GAATTATAACGAATTGACGTTTTTACCCTTGAAACTTAAATTCAAGGAAAGGAAAATTATCACTTGTATACCC
       TAGGGAAATTATCATTCGT TACCCT   TTTACTCTGTTAT AAAAATACTACAA   TTT AGGGTGTATTAAT GTCCACC  AA TTGACAAAA  TATC        ACTAAACTGTTA    TCGTTTGAA       GTTAACG                                                                         
       ||||||||||||||||||| ||||||   ||||||||||||| |||||||||||||   ||| ||||||||||||| |||||||  || |||||||||  ||||        ||||||||||||    |||||||||       |||||||                                                                          
       ATCCCTTTAATAGTAAGTA ATGGGA   AAATGAGACAATA TTTTTATGATGTT   AAA TCCCACATAATTA CAGGTGG  TT AACTGTTTT  ATAG        TGATTTGGCAAT    GGTAAATTT       AGTAGTA                                                                         
ATTAAAT                   G      ATC             T             TTC   C             A       TA  C         AC    TCAACAGA            GAAC         ATATTAC       TCCTCATTAGACCAGAAAAATATACTATGTTTACTATTAAATTCCCATATGTTCACTATTATTCTTTAAAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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