Plant MITE

SE3320153

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7618
citrus sinensis
SE3320153
Mutator
M2
chr7:16061902-16062112
TTTTTTTTA
GAGTAATGATATAGCCACAAACTCTTGTACAAACTTATTTTGTACAAACTGATGTGGCGTTAATTCATTGGTTGAATTAAATATCTCTTG

Secondary structure and sequence

TSD TIR

5'

3'

TTTTTTTTA                                 C              C                            -----------------T     TC  T  GT
         GAGTAATGATATAGCCACAAACTCTTGTACAAA TTATTTTGTACAAA TGATGTGGCGTTAATTCATTGGTTGAAT                  AAATA  TC TG  
         ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||                  |||||  || ||  C
         CTCATTACTATGTCGGTGTTTGAGAACATGTTT AATAAAACATGTTT ACTACACTGTAATTAAGTAACCAACTTA                  TTTAT  AG AC  
                                          A              A                            CCTTTATATTTTATTATC     TT  T  AT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320153

TTTTTTTTAGAGTAATGATATAGCCACAAACTCTTGTACAAACTTATTTTGTACAAACTGATGTGGCGTTAATTCATTGGTTGAATTAAATATCTCTTGGTCTACATGATTTATTTCTATTATTTTATATTTCCATTCAACCAATGAATTAATGTCACATCAATTTGTACAAAATAAATTTGTACAAGAGTTTGTGGCTGTATCATTACTC

Copy Cancel