Plant MITE

SE3320154

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7619
citrus sinensis
SE3320154
Mutator
M2
chr7:18599565-18599769
TATATTTAT
ATATTTATGAGTAATGATACAGCCACAAACTCTTGTACAAACT

Secondary structure and sequence

TSD TIR

5'

3'

T   TT   -           C                       TATTTTGTACAAACTA  A      TAATTC           GA      AAAATAATAAAA   AA
 ATA  TAT GAGTAATGATA AGCCACAAACTCTTGTACAAACT                AC TGGCAT      ATTGGTTGAAT  AAATAT            ACA  
 |||  ||| ||||||||||| |||||||||||||||||||||||                || ||||||      |||||||||||  ||||||            |||  T
 TAT  ATA CTCATTACTAT TCGGTGTTTGAGAACATGTTTGA                TG ACCGTA      TAACCAACTTA  TTTATA            TGT  
    TT   T           A                       ---------------C  C      CTATTC           -A      --GTGAACCGGG   AC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320154

TATATTTATGAGTAATGATACAGCCACAAACTCTTGTACAAACTTATTTTGTACAAACTAACATGGCATTAATTCATTGGTTGAATGAAAATATAAAATAATAAAAACAAATCATGTGGGCCAAGTGATATTTAATTCAACCAATCTTATCATGCCACGTCAGTTTGTACAAGAGTTTGTGGCTATATCATTACTCTATATTTAT

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