SE3320156

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7621
  • citrus sinensis
  • SE3320156
  • Mutator
  • M14
  • chr9:7599540-7600056
  • TATTAATAT
  • TATTAATATGGGAAATTATCATTTTATTACCAAAGTTATTCTGACATATCATGTCAGTACCATGGTTTGCCAAAAAGTGCATTTTACTACCAAACGTTTGCGCCGTTATCAATTCACTACTATTCCGTTAAGAA

Secondary structure and sequence

TSD    TIR
5'



3'
         T    A             T                                           A                 C          C               C                 --------------A      ---- TGTTTAACATAAATTGAGTTAAAAGTCGATTTTACCCCCAAGAGTTTAAAAGATAATTTTACCAGTTGTAATTTAAGCATTATATGTTAGAATAACTTTGGTAGTAA
 TATTAATA GGGA ATTATCATTTTAT ACCAAAGTTATTCTGACATATCATGTCAGTACCATGGTTTGCC AAAAGTGCATTTTACTA CAAACGTTTG GCCGTTATCAATTCA TACTATTCCGTTAAGAA               ATGTTA    A                                                                                                           
 |||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||               ||||||    |                                                                                                           A
 ATAATTAT CCCT TAATAGTAAAATG TGGTTTCAATAAGACTGTATAGTACAGTTATGGTACTAAACGG TTTTCACGTAAAATGAT GTTTGCAAAC CGGCAATAGTTAAGT ATGATAAGGCAATTCTT               CTACAG    A                                                                                                           
T        -    A             T                                           C                 T          A               A                 GCAATTTTTTAACGA      AACG CTACAGTATTGCTGTAGTTTCTGTTAAGGTCAACATTCTCATTTTAACAGACAATTAAACTATCTATTTAATAGTAAAATGATGGTTCAAAAATCACCTTAATAGTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End