Plant MITE

SE3320176

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7641
citrus sinensis
SE3320176
Mutator
M6
chrUn:63066145-63066314
ATTTTGCAA
TTGCAAGGACCTGTCTATGGTACAGATTCTGTAA

Secondary structure and sequence

TSD TIR

5'

3'

ATT      ---    C  T   TGG      T       CAAAC   TC   TCATCCCACCATCCGATTTTCTATTGTTTAGTTTCTCA
   TTGCAA   GGAC TG CTA   TACAGA TCTGTAA     ATC  CCG                                      
   ||||||   |||| || |||   |||||| |||||||     |||  |||                                      C
   AACGTT   CCTG AC GAT   ATGTCT AGACATT     CGA  TGT                                      
         TTA    A  T   CGA      T       -----   --   CTGACGTCGTAGTCGGCAACCTACACCAACCTACACCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320176

ATTTTGCAAGGACCTGTCTATGGTACAGATTCTGTAACAAACATCTCCCGTCATCCCACCATCCGATTTTCTATTGTTTAGTTTCTCACTCCACATCCAACCACATCCAACGGCTGATGCTGCAGTCTGTAGCTTACAGATTCTGTAAGCTAGTCAAGTCCATTTTGCAA

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