SE3320178

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7643
  • citrus sinensis
  • SE3320178
  • Mutator
  • M5
  • chr7:15071898-15072056
  • TAAAATATA
  • TAGGATCAGGCTACGGTGCAACTGTGGTACCGTGCCGTAGTTGCATCCAGCCGTTGGATGCACTTGGATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAATA    ATC     -AC                          T     C              ACT      GA
       TAGG   AGGCT   GGTGCAACTGTGGTACCGTGCCGTAG TGCAT CAGCCGTTGGATGC   TGGATT  
       ||||   |||||   |||||||||||||||||||||||||| ||||| ||||||||||||||   ||||||  T
       ATCC   TTTGG   CCACGTTGACACCATGGCACGGTATC ACGTA GTCGGCAACCTACG   ACCTAG  
ATATAAA    -CC     ACA                          C     A              GTC      GG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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