Plant MITE

SE3320180

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7645
citrus sinensis
SE3320180
Mutator
M2
chr5:13665200-13665419
TTAAAAAAA
AAGAGTAATAATATAGCCACAAACTCTTGTACAAATTTATTTTGTACAAACTGATGTGGCGTTAATTTATTGGTTGAATTAAATAT

Secondary structure and sequence

TSD TIR

5'

3'

TTAAAAA      A  A      C        C     C                  C                            -T      CTATTGGCCCAC   A
       AAGAGT AT ATATAG CACAAACT TTGTA AAATTTATTTTGTACAAA TGATGTGGCGTTAATTTATTGGTTGAAT  AAATAT            ATG 
       |||||| || |||||| |||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||  ||||||            ||| T
       TTCTCA TA TATATT GTGTTTGA AACAT TTTGAATAGAACATGTTT ACTACACTGTAATTAAGTAACCAACTTA  TTTATA            TAC 
AAAAAAA      C  C      A        A     A                  A                            TT      TTTTATTATATT   T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320180

TTAAAAAAAGAGTAATAATATAGCCACAAACTCTTGTACAAATTTATTTTGTACAAACTGATGTGGCGTTAATTTATTGGTTGAATTAAATATCTATTGGCCCACATGATTCATTTATATTATTTTATATTTTTATTCAACCAATGAATTAATGTCACATCAATTTGTACAAGATAAGTTTATACAAAAGTTTGTGATTATATCATCACTCTTAAAAAAA

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