Plant MITE

SE3320219

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7684
citrus sinensis
SE3320219
Mutator
M5
chr9:9112084-9112251
TGAAATATG
GGG

Secondary structure and sequence

TSD TIR

5'

3'

 TGAAATAT   ATAAAA                                     CAA         TC       TTCA     A
         GGG      CTGTGGTGCAACTGTGGTACCGTGCCACAGTTGCACC   CCGTTGGAT  CCACTTA    AGTGG 
         |||      |||||||||||||||||||||||||||||||||||||   |||||||||  |||||||    ||||| C
         CCC      GATGTCACGTTGACACCATGGCACGGTGTCAACGTGG   GGCAACCTA  GGTGAGT    TCACC 
GTATAAAGT   -AGTCC                                     -TC         --       TTAC     C

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320219

TGAAATATGGGATAAAACTGTGGTGCAACTGTGGTACCGTGCCACAGTTGCACCCAACCGTTGGATTCCCACTTATTCAAGTGGACCCCACTCATTTGAGTGGATCCAACGGCTGGTGCAACTGTGGCACGGTACCACAGTTGCACTGTAGCCTGACCCTGAAATATG

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