SE3320223

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7688
  • citrus sinensis
  • SE3320223
  • Mutator
  • M32
  • chr2:12269744-12270178
  • TAATATAAA
  • AGGGAAATTATCATTCATATACCCTATAGATGCTCTGTTATAAAAAATACTACAACACTTTGATGGTGTATCAATCGTCCACCCTAAGTTGACAAAATATATCTGCCGTCCACCAAACTGTTACTTGCCGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATATAA     A       T  A      C        C        A                     T                                 TA         T              C   C     AAAT   A     -     GGGGTAATTTGGTCTTTTCATATAATACAAGTGATAATTTAAGGGTATACAAGTGATAA
        AGGGA ATTATCA TC TATACC TATAGATG TCTGTTAT AAAAATACTACAACACTTTGA GGTGTATCAATCGTCCACCCTAAGTTGACAAAA  TATCTGCCG CCACCAAACTGTTA TTG CGTTT    AAG TAACG CCAGA                                                           
        ||||| ||||||| || |||||| |||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||| ||| |||||    ||| ||||| |||||                                                            
        TCCCT TAATAGT AG ATATGG ATATCTAC AGACAATA TTTTTATGATGTTGTGAAACT CTACATAGTTAGCAGGTGGGATTTAACTGTTTT  ATAGACGGC GGTGGTTTGGCAAT GAC GCAAA    TTC ATTGC TTATT                                                           
AAATATAA     A       C  C      T        A        G                     C                                 CG         T              C   A     --CT   A     C     ATCACTTAACTGCTAAAATGGGAACTTTTAATAGTAAACATATGGGAATTTAAGAAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3