SE3320228

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7693
  • citrus sinensis
  • SE3320228
  • Mutator
  • M49
  • chr6:11530190-11530360
  • TAATAATAA
  • AGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATAATA    GCTT    T       CTT      G     TA   -AA -    ATCTTCCACGGGTGTTGGTGCTGATGCAAC
        AGGA    GCTA GTTGCAG   CTGCAA TAACA  GCC   T GGAA                              
        ||||    |||| |||||||   |||||| |||||  |||   | ||||                              G
        TCCT    CGAT CAACGTC   GACGTT ATTGT  CGG   C TATA                              
AATAATAA    GTGC    T       TTC      G     --   AAC G    ACTGGGAACGTATGTGCCGAGGGAACGGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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