SE3320246

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7711
  • citrus sinensis
  • SE3320246
  • Mutator
  • M12
  • chr7:31866807-31867217
  • TTTAAAGAA
  • GGGTAATTTTTAAAAACCTCCCCTGAGGTTTGGACTTGTTGCAAGTAGATGGCGAGAATTGATTTATTTGTAAAAAACCCCCTACCGTCAGTTAAGTTTAACATTGACCGTTAGTTGACCGTGGAAAGACAATATTACCCTCAACAATAGTTTGTAAACGAAAATAACTAAAAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTAAAGAAC                                 A                                                                                         G                 C                            -AAA     CCAAAATTATTG    AA
          GGGTAATTTTTAAAAACCTCCCCTGAGGTTTGG CTTGTTGCAAGTAGATGGCGAGAATTGATTTATTTGTAAAAAACCCCCTACCGTCAGTTAAGTTTAACATTGACCGTTAGTTGACCGTG AAAGACAATATTACCCT AACAATAGTTTGTAAACGAAAATAACTA    AAAAA            GTGC  
          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    |||||            ||||  A
          CCCATTAAAAATTTTTGGAGGGGACTCCAAACC GAACAACGTTCATCTACCGCTCTTAACTAAATAAACATTTTTTGGGGGATGGCAGTCAATTCAAATTGTAACTGGCAATCAACTGGCAC TTTCTGTTATAATGGGA TTGTTATCAAATATTTGCTTTTATTGAT    TTTTT            CACG  
CAAGAAATTT                                 C                                                                                         G                 A                            ACAG     ---TATCCCAAA    AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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