Plant MITE

SE3320255

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7720
citrus sinensis
SE3320255
Mutator
M51
chr8:16905039-16905734
TTAAACCAA
AAGGGAAATTTACAACCGTCCACCTGTTTGTTTTGTCTTTTTTAAAAATACACAAACACTTTTTTTTTTTCAGTGCGCCACCTGAAGTTTGCTTTTTGTTGCATTCTTCCACTTCCGTCTAATTTCCGTTAGCAAATTTAACGGAATGACCTTTTTACCCCTCAAAATTATAATTTAACCCAAAATAAATAGAAATTGAAGATAAATTGGATGGATTTATTTTTTTTTCAAAGGTGGATGCTAGAAATTGGAGGAAAATAATGTTTGTTGCTTGCTAAATTTAGAAAATTTATATTTATTTTTTTGGAGGA

Secondary structure and sequence

TSD TIR

5'

3'

TTAAACC              AC                                                                                         C                          CAA          -----------     C                  A                    A       A              GA    TTT                                      A                              A                   AAAT    TTTGTTACTTGCTAGATTT
       AAGGGAAATTTACA  CGTCCACCTGTTTGTTTTGTCTTTTTTAAAAATACACAAACACTTTTTTTTTTTCAGTGCGCCACCTGAAGTTTGCTTTTTGTTGCATT TTCCACTTCCGTCTAATTTCCGTTAG   ATTTAACGGA           ATGAC TTTTTACCCCTCAAAATT TAATTTAACCCAAAATAAAT GAAATTG AGATAAATTGGATG  TTTA   TTTTTTCAAAGGTGGATGCTAGAAATTGGAGGAAAATA TGTTTGTTGCTTGCTAAATTTAGAAAATTT TATTTATTTTTTTGGAGGA    AGTG                   
       ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   ||||||||||           ||||| |||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||  ||||   |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    ||||                    
       TTCCCTTTAAATGT  GCAGGTGGACAAACAAAACGGAAAAAGTTTTTATGTGTTTGTGAAAAAAAAAAAGTCACGCGGTGGACTTTAAACGAAAAACAACGTAA AAGGTGAAGGCAGATTAAAGGCAATC   TAAATTGCCT           TACTG AAAAATGGGGAGTTTTAA GTTAAATTGGGTTTTATTTA CTTTAAC TCTATTTAATCTAC  AAAT   AAAAAAGTTTCCACCTACGATCTTTAACCTCCTTTTAT ACAAACAACGAACGATTTAAATTTTTTAAA ATAAATAAAAAAACTTTCT    CTTT                   
AACCAAA              GA                                                                                         A                          ACC          TACAATTGCTT     T                  C                    C       C              AT    -TT                                      C                              C                   ----    TTTATTTATGTTTAAAAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320255

TTAAACCAAGGGAAATTTACAACCGTCCACCTGTTTGTTTTGTCTTTTTTAAAAATACACAAACACTTTTTTTTTTTCAGTGCGCCACCTGAAGTTTGCTTTTTGTTGCATTCTTCCACTTCCGTCTAATTTCCGTTAGCAAATTTAACGGAATGACCTTTTTACCCCTCAAAATTATAATTTAACCCAAAATAAATAGAAATTGAAGATAAATTGGATGGATTTATTTTTTTTTCAAAGGTGGATGCTAGAAATTGGAGGAAAATAATGTTTGTTGCTTGCTAAATTTAGAAAATTTATATTTATTTTTTTGGAGGAAAATAGTGTTTGTTACTTGCTAGATTTAGAAAATTTGTATTTATTTTTTCTCTTTCAAAAAAATAAATACAAATTTTTTAAATTTAGCAAGCAACAAACACTATTTTCCTCCAATTTCTAGCATCCACCTTTGAAAAAATTTAAATACATCTAATTTATCTCCAATTTCCATTTATTTTGGGTTAAATTGCAATTTTGAGGGGTAAAAATGTCATTTCGTTAACATTCCGTTAAATCCACTAACGGAAATTAGACGGAAGTGGAAAAATGCAACAAAAAGCAAATTTCAGGTGGCGCACTGAAAAAAAAAAAGTGTTTGTGTATTTTTGAAAAAGGCAAAACAAACAGGTGGACGAGTGTAAATTTCCCTTAAACCAA

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