SE3320256

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7721
  • citrus sinensis
  • SE3320256
  • Mutator
  • M33
  • chr3:15775363-15775521
  • CCATCATAA
  • GGGGAAACCTTAGGTGCAACTGTGGCACCGTGCCACAGTTGCATCTAGCCGTTGGATGCCAGTGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
CCATCATAA     --AAC  TA                                               C   -   CCCC
         GGGGA     CT  GGTGCAACTGTGGCACCGTGCCACAGTTGCATCTAGCCGTTGGATGC AGT GGA    
         |||||     ||  ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    A
         CCCCT     GA  CCACGTTGACACCGTGGCACGGTGTTAACGTAGATCGGCAACCTACG TCA CCT    
  AATACTA     AGTCC  TG                                               -   A   AATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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