SE3320258

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7723
  • citrus sinensis
  • SE3320258
  • Mutator
  • M2
  • chr1:4250366-4250585
  • TTATTTAGC
  • TTATTTAGCGAGTAATGATACAGCCACAAACTCTTGTACAAATTTATTTTATACAAACTGATGTGGCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
    TT   C                       C                 A                  TAATTC           AA     TAAATTAATAAAAACAAA    GCGG
 TTA  TAG GAGTAATGATACAGCCACAAACT TTGTACAAATTTATTTT TACAAACTGATGTGGCAT      ATTGGTTGAAT  AAATA                  TCAT    
 |||  ||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||      |||||||||||  |||||                  ||||    G
 GAT  ATT CTCATTACTATGTCGGTGTTTGA AACATGTTTGAATAAAA ATGTTTGACTACACCGTA      TAACCAACTTA  TTTAT                  AGTG    
C   TT   -                       A                 C                  CTATTC           -A     ------------------    AACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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