SE3330259

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7724
  • citrus sinensis
  • SE3330259
  • hAT
  • Hat3
  • chr7:3699421-3699945
  • CAACTACT
  • TAGGGGTGGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
CAACTACT            TTTTAC         CCCGATAAATTTCGGGTTCGGGTCGGATCGGGTCGGGATCGAAACCCGATCGGTTTGAAATTTACAAACCCGATCGGGTTGTGATCGGTTCGGGTCAAACCCGACCCGATCCGAATACCCGATCGGGTTCTTAAAAAAAAAAAAAACGTACTGACCCGAATTGACCTGATTTCAACCGACCCGAACTGACCCGAACTGACCCTATTTCAACCGACCCGAATTGACCCGAA
        TAGGGGTGGGCA      CCGACCCGA                                                                                                                                                                                                                                      
        ||||||||||||      |||||||||                                                                                                                                                                                                                                       
        ATCCCCACCCGT      TTAGCCCAA                                                                                                                                                                                                                                      
TCATCAAC            -----T         GCCCAGTTGGGCTAGCCCAAAGCCCAACAAGCCCAATCTGTTCCTTGTTAGGCTTGTATTGGGCTTAATTACTGGGCTGGGCTTGGCTGGGCTTGATATAAGCCCAGCCCAGTAATTAAGCTCAATACAAGCCCAACCTAGCCCAACCTAAATTTTACCCATCTTAACTCAAGCCCAGTTAAACCCAATCAAGCCCAGTTAAGCCCAGTTAAGCCCAGTCAAGCCCAGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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