SE3320260

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7725
  • citrus sinensis
  • SE3320260
  • Mutator
  • M5
  • chrUn:41692663-41692830
  • CTGTCTAGC
  • CTAGCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
CTGT    -   --ATAAAA                                     CAA        TT        TT A   AGA
    CTAG CGG        CTGTGGTGCAACTGTGGTACCGTGCCACAGTTGCACC   CCGTTGGA  TCCACTTA  T AGT   
    |||| |||        |||||||||||||||||||||||||||||||||||||   ||||||||  ||||||||  | |||   C
    GATC GTC        GATGTCACGTTGACACCATGGCACGGTGTCAACGTGG   GGCAACCT  AGGTGAGT  A TCA   
   C    T   CCCAGTCC                                     -TC        --        TT C   CCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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