SE3320264

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7729
  • citrus sinensis
  • SE3320264
  • Mutator
  • M32
  • chr7:6664583-6665038
  • TTTAAAAAA
  • AAAGGAAAATTATCATTCGTATACCCTTAATTTACTCCGTTATCAAAAATACTATAACACTTTGAGGGTGTATCAATCGTTCACCCTAAGTTGACAAAATGTATTTGCCGTCCACCAAACCGTTACTTGCTGTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TTTAAA     A                 C   TA    A   C     C                                 C T             A     TG         T              C         AAATAGGAT    -    - GGAGTAATTTGGTATTTTCATATGATACAAGTGATAATTTAAGGGTATACAAGTGATAATAAGAGAATTTAA
      AAAGG AAATTATCATTCGTATA CCT  ATTT CTC GTTAT AAAAATACTATAACACTTTGAGGGTGTATCAAT G TCACCCTAAGTTG CAAAA  TATTTGCCG CCACCAAACCGTTA TTGCTGTTT         GATA TCAG A                                                                        
      ||||| ||||||||||||||||| |||  |||| ||| ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| |||||  ||||||||| |||||||||||||| |||||||||         |||| |||| |                                                                        G
      TTTCC TTTAATAGTAAGCATAT GGA  TAAA GAG CAATA TTTTTATGATGTTGTGAAACTCCCATATAGTTA C GGTGGGATTTAAC GTTTT  ATAGACGGC GGTGGTTTGGCAAT GACGGTAAA         CTTT AATT C                                                                        
AAAAAA     C                 A   TA    C   A     T                                 A C             A     CG         T              C         ---------    C    G CTTAATATAGTTTAACTGTTAAAATGGGAACTTTGAATTTAATTTCATTTCCTTTTAATAGTGAACATATGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End