SE3320267

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7732
  • citrus sinensis
  • SE3320267
  • Mutator
  • M2
  • chrUn:68876344-68876563
  • TTAAATATT
  • AATATTGAGTAATGATACAGCCACAAACTCTTGTACAAACTTATTTTGTACAAACTGACGTGGCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTA      ---                                                    C       TAATTC           GA     TAAATTAATAAAAATAAA    G  G
   AATATT   GAGTAATGATACAGCCACAAACTCTTGTACAAACTTATTTTGTACAAACTGA GTGGCAT      ATTGGTTGAAT  AAATA                  TCAT TG 
   ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||      |||||||||||  |||||                  |||| || G
   TTATAA   CTCATTACTATGTCGGTGTTTGAGAACATGTTTGAATAAAACATGTTTGACT CACCGTA      TAACCAACTTA  TTTAT                  AGTG AC 
         ATT                                                    A       CTATTC           -A     ------------------    A  C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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