SE3330271

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7736
  • citrus sinensis
  • SE3330271
  • hAT
  • Hat2
  • chrUn:58038771-58039144
  • CTTGTGAG
  • CTTGTGAGTAGGGATGGCAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
             A       TTTTCCTGA       AT   -   C    TTGTGACATATTTTTGTCCCATAAAAAAATTTGGGACGGGAGTGGGACATTTTTTTATCCCAATTACATATGCGGGATGGGAGTGGGATTGACAAATTTCGTCCCATCCCGTCTCGTTACCGATTAAGAATGAAATTTTTT
CTTGTGAGTAGGG TGGCAAT         CCATCCC  TTG GGA GGGA                                                                                                                                             
||||||||||||| |||||||         |||||||  ||| ||| ||||                                                                                                                                              
GAGTGTTCATCCC ACCGTTA         TGCCCTA  CCC ACC CTAA                                                                                                                                             
             A       ------CCC       --   T   -    ATGGTTAGGGTCTGGGTAGGGCATATATGTTTACCCTACTTTTTTGCAGGGTCAGGGCAGGGATATAAAAAAAACCCTGTTTTTATACAGGGTTAGGGCAGGGTTTTCTCTACTCTAGGACGCCCTAGGGTAGGGTTAACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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