Plant MITE

SE3320273

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7738
citrus sinensis
SE3320273
Mutator
M22
chr1:14977738-14977896
TATTTAAAA
TTTAAAAGGGTC

Secondary structure and sequence

TSD TIR

5'

3'

TA      A   T -TAGC                                             A   A    ATA    AT
  TTTAAA GGG C     TATGGTGCAACTGTGGTACCATACCACAGCTGCACCTAGCCATTA ATT AGCT   GTAC  
  |||||| ||| |     ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||   ||||   
  AAATTT TCC G     ATACCACGTTGACACCATGGTATGGTGTCGACGTGGATCGGTAAT TAG TCGA   CGTG  
 A      A   T TTTTA                                             C   A    ---    TA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320273

TATTTAAAAGGGTCTAGCTATGGTGCAACTGTGGTACCATACCACAGCTGCACCTAGCCATTAAATTAAGCTATAGTACATATGTGCAGCTAGATCTAATGGCTAGGTGCAGCTGTGGTATGGTACCACAGTTGCACCATAATTTTGTCCTATTTAAAA

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