SE3320309

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7774
  • citrus sinensis
  • SE3320309
  • Mutator
  • M14
  • chrUn:44795734-44796194
  • TTTCAAAAG
  • AAAAGGGATATTATCATTTTCCCACCAAAGGTATTCTGACACATCATGTCAGTACCACGGTTGGTAAAACCATTAGTTTACCACCAAATGTTTAAACTGTTAGCATTTTCCCGTCATTCCGTTAAAACTTAGTTAATATGTAATGGAAAATTCATAAAAGGTCAATTTTACCCCTGGAGCGTAAAAGAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTC                                                              -                                                                   T                                          C                ---GATTTTT   C    A   GAAAGAACAAC    GA
    AAAAGGGATATTATCATTTTCCCACCAAAGGTATTCTGACACATCATGTCAGTACCACGGTT GGTAAAACCATTAGTTTACCACCAAATGTTTAAACTGTTAGCATTTTCCCGTCATTCCGTTAAAACT AGTTAATATGTAATGGAAAATTCATAAAAGGTCAATTTTACC CTGGAGCGTAAAAGAC          GCC TTTA GAA           AAAT  
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||          ||| |||| |||           ||||   
    TTTTCCCTATAATAGTAAAAGGGTGGTTTCCATAAGACTGTGTAGTACAGTTATGGTGCCAA CCATTTTGGTAGTCAAATGGTGGTTTGCAAATTTGACAATCGTAAAAGGGTGGTAAGGTAATTTTGA TCAATTATACATTGTCTTTTAAGTGTTTTCCAGTTAAAATGG GACCTCGCATTTTCTG          TGG AAAT CTT           TTTA  
AAAC                                                              A                                                                   T                                          T                ATACATTAAT   A    A   -AAAACATTAA    GT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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