Plant MITE

SE3320316

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7781
citrus sinensis
SE3320316
Mutator
M13
chr2:12790074-12790283
AAACTCAAA
A

Secondary structure and sequence

TSD TIR

5'

3'

AAACTCAAATATT     TGATTTTCTTTTTTTTTAAAACCTCAATAGTGTAAATGTGTAATATATTTTATAAGGATCCCTCTAAGTTACATGCATGTACCT
             AGAGA                                                                                    
             |||||                                                                                    T
             TATTT                                                                                    
           AA     TACCCATTACGATTCAATGTACGTACATGGAATGTAGGGAGAGTGTACTTATCACATACCTATGATAAGTACACTCTCCCAACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320316

AAACTCAAATATTAGAGATGATTTTCTTTTTTTTTAAAACCTCAATAGTGTAAATGTGTAATATATTTTATAAGGATCCCTCTAAGTTACATGCATGTACCTTACAACCCTCTCACATGAATAGTATCCATACACTATTCATGTGAGAGGGATGTAAGGTACATGCATGTAACTTAGCATTACCCATTTTATAA

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