SE3320319

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7784
  • citrus sinensis
  • SE3320319
  • Mutator
  • M32
  • chrUn:73778417-73778853
  • TAATAAGAA
  • AGGGAAATTATCATTCGTATACCCT

Secondary structure and sequence

TSD    TIR
5'



3'
TAATAAGA             T           CAATTTG      TATAAA   AA  T     C     A           A  A          A    A    GT         A               CTA        -------   TTAACGGAACTGTAGCTAATTGACAATTTTACCCTTGAAAAGTATCACTTGTATACCCTTAAAATAAC
        AGGGAAATTATCA TCGTATACCCT       TGCTTC      AAA  TA TACAA ACTTT AGGGTGTATCA TC TTCACCCTAA TTGA AAAA  TATCTGCCG CCACTAAACTGTTAG   CCATTTGA       AAG                                                                    
        ||||||||||||| |||||||||||       ||||||      |||  || ||||| ||||| ||||||||||| || |||||||||| |||| ||||  ||||||||| |||||||||||||||   ||||||||       |||                                                                     
        TCCCTTTAATAGT AGCATATGGGA       ATGAGG      TTT  AT ATGTT TGAAA TCCCATATAGT AG AAGTGGGATT AACT TTTT  ATAGACGGC GGTGGTTTGGCAATT   GGTAAATT       CTG                                                                    
AAGAATAA             T           --ATCAA      CAATAG   AA  C     A     G           C  C          C    G    AC         A               AAC        GATACTA   CAGTCTCCCCATTATACCAGAAAAATATACTATGTTCACTATTAAAATCCCATATCTTCACTATTATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End