Plant MITE

SE3320331

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7796
citrus sinensis
SE3320331
Mutator
M5
chr2:12910043-12910201
TACTAAATC
ATCGGG

Secondary structure and sequence

TSD TIR

5'

3'

     TACTAA      GAAAC     AC                    AAA   C     A           CAG    CTCC
           ATCGGG     CTGTG  GCAACTGTGGTACCGTGCCA   TTG ATCCA CCGTTGGATGC   TGGA    
           ||||||     |||||  ||||||||||||||||||||   ||| ||||| |||||||||||   ||||    A
           TAGTCC     GATGC  CGTTGACACCATGGCACGGT   AAC TAGGT GGCAACCTACG   ACCT    
CTAAATCATCC      -----     CA                    GTC   A     C           TGA    AACC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320331

TACTAAATCGGGGAAACCTGTGACGCAACTGTGGTACCGTGCCAAAATTGCATCCAACCGTTGGATGCCAGTGGACTCCACCAATCCAAGTGCATCCAACGGCTGGATACAACTGTGGCACGGTACCACAGTTGCACCGTAGCCTGATCCTACTAAATC

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