SE3320335

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7800
  • citrus sinensis
  • SE3320335
  • Mutator
  • M11
  • chr5:6597909-6598058
  • TTAAGACTT
  • AAGACTTGGCCAGTGCTATGTTATGTTAAAGGTAACATATACGTACTCATAACAACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   A   --  -C  G G               G     A    C               ATTT      -     AC
  AAG CTT  GG  CA T CTATGTTATGTTAAA GTAAC TATA GTACTCATAACAACA    TAATAA TTTTA  
  ||| |||  ||  || | ||||||||||||||| ||||| |||| |||||||||||||||    |||||| |||||   
  TTC GAA  CC  GT A GATACAATGCAATTT CATTG ATGT TATGAGTGTTGTTGT    ATTGTT GAGGT  
     A   TT  TA  G -               G     C    A               ---C      T     GA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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