SE3320341

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7806
  • citrus sinensis
  • SE3320341
  • Mutator
  • M10
  • chr3:4185944-4186084
  • CAAATATAA
  • ATATAAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
CAA    AA  CAAA  --                          C  C              GCAT      G
   ATAT  GG    CC  CTATCTTACATGCATGTAAGATACAT CC CTCACATGAATAGT    GTGTGG 
   ||||  ||    ||  |||||||||||||||||||||||||| || ||||||||||||||    |||||| A
   TATA  CC    GG  GATAGAATGTACGTACATTCTATGTA GG GAGTGTACTTATCA    CACACC 
 AA    AA  -CCA  AA                          A  A              ----      T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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