Plant MITE

SE3320344

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7809
citrus sinensis
SE3320344
Mutator
M6
chr5:27787666-27787835
TATTGTTTT
GGACCTGTCTA

Secondary structure and sequence

TSD TIR

5'

3'

TATTGTTTT    C  T   -T      GATTCTGTAACAAACATCTCCCGTCATCCCACCATCCGATTTTCTATTGTTCAGTTT
         GGAC TG CTA  GGTACA                                                         
         |||| || |||  ||||||                                                         C
         CCTG GC GAT  AATGTC                                                         
TTTTGTTAT    A  T   CG      TTAGACATTCCATGTCTGACGTCGTAGTCGGCAACCTACACCAACCTACACCTCACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320344

TATTGTTTTGGACCTGTCTATGGTACAGATTCTGTAACAAACATCTCCCGTCATCCCACCATCCGATTTTCTATTGTTCAGTTTCTCACTCCACATCCAACCACATCCAACGGCTGATGCTGCAGTCTGTACCTTACAGATTCTGTAAGCTAGTCGAGTCCTATTGTTTT

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