SE3320349

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7814
  • citrus sinensis
  • SE3320349
  • Mutator
  • M2
  • chr8:2977771-2977990
  • TTTTTAAAA
  • TTTTAAAAGAGTAATGATACAGTCACAAACTCTTGTACAAACTTATTTTGTACAAACTAACGTGGCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
T   T               C         C                            AAC       TAATTC           GA      AAAATAATAAAA   AA
 TTT AAAAGAGTAATGATA AGTCACAAA TCTTGTACAAACTTATTTTGTACAAACT   GTGGCAT      ATTGGTTGAAT  AAATAT            ACA  
 ||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||   |||||||      |||||||||||  ||||||            |||  T
 AAA TTTTCTCATTACTAT TCGGTGTTT AGAACATGTTTGAATAAAACATGTTTGA   CATCGTA      TAACCAACTTA  TTTATA            TGT  
A   T               A         T                            CTA       CTATTC           -A      --GTGAACCGGG   AC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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