Plant MITE

SE3320353

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7818
citrus sinensis
SE3320353
Mutator
M61
chr5:1423536-1423734
AAAATAAAA
TAATGTTTGGGATCCCAACATTTGAGTCCTAACTTGAGTACT

Secondary structure and sequence

TSD TIR

5'

3'

AAAATAAAATAA       T   -      A    -     CC   C      A  AATGGT     T  C              AA     TCA     AA
            TAATGTT GGG ATCCCA CATT TGAGT  TAA TTGAGT CT      ATGTG CA TCATTTATTGGATG  TGATT   TAATT  
            ||||||| ||| |||||| |||| |||||  ||| |||||| ||      ||||| || ||||||||||||||  |||||   |||||  T
            GTTACGA TCC TAGGGT GTAA ATTCG  GTT AACTCA GG      TATAC GT GGTAGATAATCTAC  ATTAA   ATTAA  
AAAATAAAACTC       -   A      -    T     AA   A      -  GCTGAT     T  A              -C     TTC     AA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320353

AAAATAAAATAATAATGTTTGGGATCCCAACATTTGAGTCCTAACTTGAGTACTAATGGTATGTGTCACTCATTTATTGGATGAATGATTTCATAATTAATAAAATTACTTAATTACCATCTAATAGATGGATGTCATATTAGTCGGGACTCAAATTGAAGCTTATAATGTGGGATACCTAGCATTGCTCAAAATAAAA

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