SE3320359

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7824
  • citrus sinensis
  • SE3320359
  • Mutator
  • M62
  • chrUn:56659342-56659889
  • ATTTTTTAA
  • GAGTTGGATTATTGGCACCCCTCCATAATTCTTTTAAAACCCCTCTTCTATTATAATTACATTTTAGGACAATACTCTAATATATCTCACATCTATTTTATCT

Secondary structure and sequence

TSD    TIR
5'



3'
ATTTTTTAA                  C      T     T            -C   T      -ATT    ---T      CAA      AA   A   -------     C  T   ----    CATTTCAAAA           C    TTTAAAAAAAAAAA         CTTGTATTTTCTCTGCTATCACACTCACACATGTAATTTTTTTCTCAAATTCTCTATAAATTTTTCTTCAATTAATAAGATAATGTATTGATAATAAATAAAACACATTCTGATA
         GAGTTGGATTATTGGCAC CCTCCA AATTC TTTAAAACCCCT  TTC ATTATA    ACAT    TTAGGA   TACTCT  TAT TCT       CACAT TA TTT    ATCT          TTTTGTTTTTT TCTC              AGAAAAATG                                                                                                                   
         |||||||||||||||||| |||||| ||||| ||||||||||||  ||| ||||||    ||||    ||||||   ||||||  ||| |||       ||||| || |||    ||||          ||||||||||| ||||              |||||||||                                                                                                                   A
         CTCAACCTGATAACTGTG GGAGGT TTAAG AAATTTTGGGGA  AAG TAATAT    TGTA    AGTTTT   ATGGGA  ATG AGA       GTGTA AT AAA    TAGA          AAAATAAAAAA AGAG              CGAGGAGTG                                                                                                                   
AATTTTTTA                  A      T     C            AA   T      AATC    TTAC      --A      --   A   TTTATTT     A  T   CACT    ---AAATTAA           A    --------------         TTTATTAAAAATAGCCACTATTTGAAGAAATATTTTTAGTTACTTAGTTTATTTAAGAGAGATTCTAATACTACATTTTTCAAAATCATACTTGAATTTTTTTTCATTCTGTTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End