SE3330375

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7840
  • citrus sinensis
  • SE3330375
  • hAT
  • Hat2
  • chr3:8924830-8925226
  • CTGACCAG
  • CTGACCAGTAGGGATGGCAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
   AC        A       TTT      T               GGGATCCCATCCCATTTGGGACGGGATTAGGACATATTTTTGTTCCATAAAAAAATTTGGGATGGGATTGGGACATTTTTTTTATCCCAATTACATATGCGGGACGGGAGTGGGATTGATAAATTCCGTCCCATCCCGTCTCATTACCGATTAA
CTG  CAGTAGGG TGGCAAT   TCCCGA GGGATGGGATCCTGC                                                                                                                                                          
|||  |||||||| |||||||   |||||| |||||||||||||||                                                                                                                                                          G
GAC  GTCATCCC ACCGTTA   CCCTGC CCTACCCTACCCTAA                                                                                                                                                          
   CA        A       ---      -               ATGGTTAGGGTCAGGGTAGGGCATATACGTTTACCCTACTTTTTTGCAGGGTTAGGGCAGGGATATAAAAAAAACCCTGTTTTTATACAGGGTTAGGGCAGGGTTTTCTCTACCCTAGGACGCCCTAGGGTAGGGTTAACCTTTTAAAAAGTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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