SE3320389

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7854
  • citrus sinensis
  • SE3320389
  • Mutator
  • M32
  • chr4:5807037-5807471
  • ATAATTCTA
  • GGGAAATTATCAATCGTATACCCTTAGTTT

Secondary structure and sequence

TSD    TIR
5'



3'
ATAATTCTA            A           T     ACTCCA    C   TT              C   ACA        A   T                TA   A          C               ATTTAAATA   --- G   - C ---     G ----- ATCTAGTCTTTTTATATGATACAAGTGATAATTTAAGGGTATATAAGTGAT
         GGGAAATTATCA TCGTATACCCT AGTTT      TTAT AAA  TACTACAACACTTT AGG   TATCAGTC TCC CCCTAAGTTGACAAAA  TAT TGTCGTCCAC AAACTGTTAGTTGCC         TGA   T ATG T A   GAGGG T     A                                                   
         |||||||||||| ||||||||||| |||||      |||| |||  |||||||||||||| |||   |||||||| ||| ||||||||||||||||  ||| |||||||||| |||||||||||||||         |||   | ||| | |   ||||| |     |                                                    
         CCCTTTAATAGT AGCATATGGGA TTAAA      AATA TTT  ATGATGTTGTGAAA TCC   GTAGTTAG AGG GGGATTTAACTGTTTT  ATA ACGGCAGGTG TTTGGCAATCGACGG         ACT   A ATT C C   TCATT G     C                                                   
ATCTTAATA            A           T     CACGAA    T   TT              T   CAC        C   T                CA   G          A               ------CAA   TTC -   G - TTG     - CTTAA TGCTAAAATGGGAACTTTTAATAGTGAATATATGGGAATTTTAGAGAATAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End