Plant MITE

SE3360394

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7859
citrus sinensis
SE3360394
Micron
Mim1
chr7:17646094-17646282
TATATAT
TATATATATATATAGTAGTTTTCTGGTCAGGGATTTTAAAGTGCGGGAAAGTCCAGGAAAGTTTTAAAACCACACGGCTTTAAAGGCCTA

Secondary structure and sequence

TSD TIR

5'

3'

              -  T   T                                CCA     G          A  C  C         C  CGG
 TATATATATATAT AG AGT TTCTGGTCAGGGATTTTAAAGTGCGGGAAAGT   GGAAA TTTTAAAACC CA GG TTTAAAGGC TA   
 ||||||||||||| || ||| ||||||||||||||||||||||||||||||||   ||||| |||||||||| || || ||||||||| ||    
 ATATATATATATA TC TTA AAGGTCAGTCCTTAAAATTTCACGCCCTTTCA   CCTTT GAAATTTTGG GT CC AAATTTCCG AT   
T             C  T   C                                CAC     G          C  A  A         A  TTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3360394

TATATATATATATAGTAGTTTTCTGGTCAGGGATTTTAAAGTGCGGGAAAGTCCAGGAAAGTTTTAAAACCACACGGCTTTAAAGGCCTACGGTTTTAAGCCTTTAAAACCATGCGGTTTTAAAGGTTTCCCACACTTTCCCGCACTTTAAAATTCCTGACTGGAACATTTCTCATATATATATATAT

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