Plant MITE

SE3360397

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7862
citrus sinensis
SE3360397
Micron
Mim1
chrUn:84526320-84526507
TATATAT
TATATATATA

Secondary structure and sequence

TSD TIR

5'

3'

          -CAGAAATG    -AA  C  A   T        -A        C  A     GTAT        C     ---    ACTTTAA
TATATATATA         TTTC   TC GG ATT TAAAGTGC  GAAACGTC GG AAAAC    AAACTGTG GGTTT   AAGC       
||||||||||         ||||   || || ||| ||||||||  |||||||| || |||||    |||||||| |||||   ||||        
ATATATATAT         AAAG   AG CC TAG ATTTCACG  CTTTGCAG TC TTTTG    TTTGGCAC CCAAA   TTCG       
          CTATCATCA    ACC  A  C   T        CC        A  C     AAAT        C     ATT    AATTTTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3360397

TATATATATACAGAAATGTTTCAATCCGGAATTTTAAAGTGCAGAAACGTCCGGAAAAACGTATAAACTGTGCGGTTTAAGCACTTTAAGTTTTAAGCTTTTAAAACCCCACGGTTTTAAAGTTTTCCTAGACGTTTCCCGCACTTTATGATCCCAGACCAGAAAACTACTATCTATATATATA

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