Plant MITE

SE3360398

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7863
citrus sinensis
SE3360398
Micron
Mim2
chr3:6386418-6386623
TATATAT
TATATATATAGTAATTTTCCAATCAGGGATCCCTGACTTTATTAAAGTCAGGGATTAGCTAAAAGATAAAATAAACACAGACTCCAATGCACTGTATTTGTCATGTAGTATAT

Secondary structure and sequence

TSD TIR

5'

3'

             A         C       C         T                            ---------------   A  -   -   TCC     A
TATATATATAGTA TTTTCCAAT AGGGATC CTGACTTTA TAAAGTCAGGGATTAGCTAAAAGATAAA               ATA AC ACA GAC   AATGC 
||||||||||||| ||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||               ||| || ||| |||   ||||| C
ATATATATATCAT AAAAGGTTA TCCTTAG GACTGAAAT ATTTCAGTTTCTAATCGATTTTCTATTT               TAT TG TGT CTG   TTATG 
             C         T       A         C                            TTTTTTAATTAAAAT   A  A   A   --T     T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3360398

TATATATATAGTAATTTTCCAATCAGGGATCCCTGACTTTATTAAAGTCAGGGATTAGCTAAAAGATAAAATAAACACAGACTCCAATGCACTGTATTTGTCATGTAGTATATTAAAATTAATTTTTTTTTATCTTTTAGCTAATCTTTGACTTTACTAAAGTCAGAGATTCCTTATTGGAAAACTACTATATATATA

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