SE3320406

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7871
  • citrus sinensis
  • SE3320406
  • Mutator
  • M21
  • chr8:2953138-2953296
  • TGGTTATTA
  • TGGTTATTAGGGTCCAGCTATGTTGCAACAGTGGTACGGTACCATTGTTGCTTTCAGCCATTGGATCT

Secondary structure and sequence

TSD    TIR
5'



3' 
    T        CCA                    C        T     TT               -TGCTAA   AA
TGGT ATTAGGGT   GCTATGTTGCAACAGTGGTA GGTACCAT GTTGC  TCAGCCATTGGATCT       TAC  
|||| ||||||||   |||||||||||||||||||| |||||||| |||||  |||||||||||||||       |||   
ATTA TGGTCCCG   TGATACAACGTTGTCATCAT CCATGGTG CAACG  GGTCGGTAACTTAGA       ATG  
    T        TTA                    A        T     TT               TATCAAC   TC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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