SE3320430

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7895
  • citrus sinensis
  • SE3320430
  • Mutator
  • M25
  • chr1:14330506-14330663
  • AGAAAATAG
  • GGGGTCCGGCTACGGTGCAACGGTGATACGGTATCACCATTGCATCCAGCCGTTGGATCCACTTGGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
 AGAAAATA    TCC     C                         A  G A                -   T    GG
         GGGG   GGCTA GGTGCAACGGTGATACGGTATCACC TT C TCCAGCCGTTGGATCC ACT GGTT  
         ||||   ||||| ||||||||||||||||||||||||| || | |||||||||||||||| ||| ||||  A
         CCTC   TTGAT CCACGTTGCCACTATGCCATAGTGG GG G GGGTCGGCAATCTAGG TGA CTAG  
GATAAAAGA    -TT     A                         C  G G                G   C    GT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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