SE3320433

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7898
  • citrus sinensis
  • SE3320433
  • Mutator
  • M32
  • chrUn:37425038-37425492
  • TTATAATAA
  • TATAATAAGGGAAATTATCAATCGTATACCCTATAGTTATTCTGTTATAAAAAATACTACAACACTTTGAGGGTGTATCAATCGTCCACCCTAAATTGACAAAAGCTATCTACCAACCACCAAACCGTTAGCTGCCGTATAAA

Secondary structure and sequence

TSD    TIR
5'



3'
T   A                ATC               A         AA                                C           A         GC     A  AA         C    GC  C   A    AG   ACGGAATTATAGTGAATTGATGATTTTACCCTTGAAACTTAAATTAAAGTAAAGAAAAATTATCACTTGAATACCCTTA
 TAT ATAAGGGAAATTATCA   GTATACCCTATAGTT TTCTGTTAT  AAAATACTACAACACTTTGAGGGTGTATCAAT GTCCACCCTAA TTGACAAAA  TATCT CC  CCACCAAAC GTTA  TG CGT TAAA  TTA                                                                               
 ||| ||||||||||||||||   ||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||| ||||||||||| |||||||||  ||||| ||  ||||||||| ||||  || ||| ||||  |||                                                                                
 ATA TATTCCCTTTAATAGT   CATATGGGATATCAA GAGATAATA  TTTTATGATGTTGTGAAATTCCCACATAGTTA CGGGTGGGATT AACTGTTTT  ATAGA GG  GGTGGTTTG CAAT  AC GCG ATTT  ACT                                                                               
A   A                AAA               C         -G                                A           C         AC     C  CA         A    GA  A   A    AT   ACTGCAGTCTCCCCATTAAACTAGAAAAATATACTATGTTCACTATTAAATTCCTATATATTCACTATTATTTTCTTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End