Plant MITE

SE3360442

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7907
citrus sinensis
SE3360442
Micron
Mim1
chr7:17646092-17646288
ATATATA
ATATATATATATATATGAG

Secondary structure and sequence

TSD TIR

5'

3'

                   -  AAATG   CA      A                    G       CC                            AAA
  ATATATATATATATATG AG     TTC  GTCAGG ATTTTAAAGTGCGGGAAAGT TGGGAAA  TTTAAAACCGCATGGTTTTAAAGGCTTA   
  ||||||||||||||||| ||     |||  |||||| |||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||    
  TATATATATATATATAT TC     AAG  CAGTCC TAAAATTTCACGCCCTTTCA GTCCTTT  AAATTTTGGTGTGCCGAAATTTCCGGAT   
TA                 A  ATCAA   AC      C                    G       CA                            GCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3360442

ATATATATATATATATGAGAAATGTTCCAGTCAGGAATTTTAAAGTGCGGGAAAGTGTGGGAAACCTTTAAAACCGCATGGTTTTAAAGGCTTAAAACCGTAGGCCTTTAAAGCCGTGTGGTTTTAAAACTTTCCTGGACTTTCCCGCACTTTAAAATCCCTGACCAGAAAACTACTATATATATATATATATATAT

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