SE3350456

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7921
  • citrus sinensis
  • SE3350456
  • PIF/harbinger
  • To2
  • chr1:23735548-23735928
  • TAA
  • AGAGCATCTCCAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA        T     AGTCTCTATAAA           AAATACT    TGCTTACTTATGTGGCAAATAGAAGGGTAAAAAATTATAATATTCTCCAAAAGACTCTTCAAATAGAAATAAATTAATATTATTTTAATCAAATAATTATTTTTTTAAAGGAAAAGTCAATAGCAATTAAAGCACTTCTCTCTCTTTCTT
  AGAGCATC CCAAA            TTTTATTCTTT       TATT                                                                                                                                                      
  |||||||| |||||            |||||||||||       ||||                                                                                                                                                       
  TCTCGTAG GGTTT            TCGAGAAGTTT       ATTC                                                                                                                                                      
AA        T     ------------           -------    TAAAATAATGAATAAACTTCTCGGTGTAATTATAAATTTCGAGGTTTTCTGTGAGATTAATTTTAAGAAGTTTATTCTTAACTAAGAGAGAGAAGTTTAAACCTCTCAATTAAAGAGAGAGAAGTTAAACATAAAATAATGAAAAGTAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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