SE3320458

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7923
  • citrus sinensis
  • SE3320458
  • Mutator
  • M21
  • chr1:17618678-17618836
  • CATTGAATT
  • ATTGAATTGGGTCCAGCTATGTTGCAACTATGGTATGGTATCACAGTTACTTTCAACCATTAGATCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
C   G   T    CC               A                  A      AC AT        ACTAA    AC
 ATT AAT GGGT  AGCTATGTTGCAACT TGGTATGGTATCACAGTT CTTTCA  C  TAGATCTA     TGTA  
 ||| ||| ||||  ||||||||||||||| |||||||||||||||||| ||||||  |  ||||||||     ||||   
 TAA TTA CCCG  TTGATACAATGTTGA ACCATACCATGGTGTCAA GAAAGT  G  ATCTAGGT     ACAT  
T   G   C    TT               C                  C      CA CC        -GTCA    GT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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