SE3320463

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7928
  • citrus sinensis
  • SE3320463
  • Mutator
  • M6
  • chr1:15999457-15999626
  • CAAAACATA
  • GGACCTGTCTATGGTACAGATTCTGTAACAAACATCTCCCGTCATCCCACC

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAAACATA    C  T   TGG              CAA   -T  C C T    CCA  ATCC   --TTTCTAT   TC   TT
         GGAC TG CTA   TACAGATTCTGTAA   ACA  CT C G CATC   CC    GAT         TGT  AGT  
         |||| || |||   ||||||||||||||   |||  || | | ||||   ||    |||         |||  |||  C
         CCTG GC GAT   ATGTCTAAGACATT   TGT  GA G C GTAG   GG    CTA         ACA  TCA  
ATACAAAAC    A  T   CGA              CCA   CT  C T -    -TC  CAAC   CACCAACCT   CC   CT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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