SE3320465

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7930
  • citrus sinensis
  • SE3320465
  • Mutator
  • M68
  • chr8:20696918-20697432
  • TAGTAAAAT
  • GGGAGATTGCCACTTTCCCCTCTACAGTAATTAACATATACCATTTACTCCCTTATTGTTTTTATAATGGCCAAAAACCCCCATGACAACATAAGTTTACAATATTACCCTTATTTTTAATTACTCTTTTATTTACATTTATTTTAAATTAAATAAATTATATGAATAGAAACTAAATAAAAAAATTAAGTATTAAAAACAAGAAATATATGTTTTGATATAAGCAAAAAAAT

Secondary structure and sequence

TSD    TIR
5'



3'
TAGTAAAAT         C  C          A                CC    A     TTA                          - A     AC                                            A        T                                        A         A                          A  C        TAATA      TT  TTC
         GGGAGATTG CA TTTCCCCTCT CAGTAATTAACATATA  ATTT CTCCC   TTGTTTTTATAATGGCCAAAAACCCC C TGACA  ATAAGTTTACAATATTACCCTTATTTTTAATTACTCTTTTATTT CATTTATT TAAATTAAATAAATTATATGAATAGAAACTAAATAAAAAA TTAAGTATT AAAACAAGAAATATATGTTTTGATAT AG AAAAAAAT     ATAAAT  TT   
         ||||||||| || |||||||||| ||||||||||||||||  |||| |||||   |||||||||||||||||||||||||| | |||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| || ||||||||     ||||||  ||   T
         CCCTCTAAC GT AAAGGGGGGA GTCATTAGTTGTATAT  TAAA GGGGG   GACAAAAATATTACCGGTTTTTGGGG G ACTGT  TATTCAAATGTTATAATGGGAATAAAAGTTGATGAGAAAATAAA GTAAATAA ATTTAATTTGTTTAGTGTACTTATCTTTGATTTATTTTTT AATTCGTAA TTTTGTTCTTTATATACAAAACTATA TC TTTTTTTA     TATTTA  AA   
TAAAATGAT         A  T          C                AA    A     TAC                          A G     CA                                            A        T                                        -         C                          C  -        -----      TT  TGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End