SE3330471

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7936
  • citrus sinensis
  • SE3330471
  • hAT
  • Hat6
  • chr5:11843271-11843754
  • ATCGCCAC
  • GCCACCAGTGGCGGACCCAG

Secondary structure and sequence

TSD    TIR
5'



3'
ATC  CAC  GT           AAACTAAAA G          -      AAAAAA    --    AACTT    ----------------  TTTTAA -    ACTCGAATACATTTTAAGTCTTATAAACTCAAATTTTATTACTTTTTTTAAAATTCTAAATAATAATAGTAATAAATTATTATTTTTAAATGCGTAAAAATATCATTTTTTGAAGTAGTATTTTAAATGCGTGAAAATATTATTTTTCGAAATAG
   GC   CA  GGCGGACCCAG         T AGGAGGGGCT TAGTTC      AATT  ATTT     AGAT                TT      T GTTC                                                                                                                                                           
   ||   ||  |||||||||||         | |||||||||| ||||||      ||||  ||||     ||||                ||      | ||||                                                                                                                                                            
   CG   GT  CCGCCTGGGTT         G TCCTCCCCGA GTCGGG      GAGA  TGGT     AATT                TG      G GTTC                                                                                                                                                           
CAC  CTA  AC           --AATTCCG G          A      -----G    CC    -----    AAAAAGAAAATTTACA  ------ G    TGGGAGACTTTTTCAATCTATTTTCTTAAACCTGTGTAAAAAGTATATGATTTTCTGAACACCAAGTTACCATTCTCACAATAAATTACTAAAATTTTGGAACCAAGTTTAGGGTAATCGGTGTAATAAAATAAAAAAATTTATAAAACACCATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End