SE3330474

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7939
  • citrus sinensis
  • SE3330474
  • hAT
  • Hat2
  • chrUn:53921232-53921628
  • ATTTTCAT
  • ATTAGGGTTGGCAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTTTC       T       ---                A   TTACCAATTCCAGTCCCGTCCCGTATATGCAAATGGGATGAAAAAACGTCCCAGTCCCGTCCTTATATTTTTTTTGGGACAAAAATATGTCTCAATCCCGTCCCAAAAGAGATGGGATCCTGCGGGATACCATCCCAATTGGAAAATTTTCCATTC
      ATTAGGG TGGCAAT   GGGACGGGATGGGATG GAT                                                                                                                                                            
      ||||||| |||||||   |||||||||||||||| |||                                                                                                                                                            T
      TAATCCC ACTGTTA   AGGGCTACCCTACTCT AGG                                                                                                                                                            
TACTTT       T       AAA                -   ACGCCCTAGGGTAGGGTAAACCCTGCCCTAAACCTGTATAAAAATAGGGTATTTTTTTAAATCCCTGCCCTCACTCTGTAAAAAAATAGGGTTAATGTATATGCCCTACCCTCACCCTAACTGTTTAAGGCAGGGTAGGGCAGAGTAACGACTAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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