SE3330475

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7940
  • citrus sinensis
  • SE3330475
  • hAT
  • Hat6
  • chr1:27422110-27422558
  • CTCTTATC
  • CAGTGGCGGACCCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
CTCTTATC  GT           AAACTAAAA G           -     AAAATTTTTTTATTTAATTT     --- TTTTAA     ACTTGAATACATTTTAAGTCTTATAAACTCAAATTTTATTACTTTTTTTTTTAAATTCTAAATAATAATAGTAATAAATTATTTTTTTAAATGCGTGAAAATATCATTTTTCGAAGTAGTTTCCACAAAATATTTAAAAAAATAAAATA
        CA  GGCGGACCCAG         T AGGGGGGGCTT AGTTT                    AGATT   T      TGTTC                                                                                                                                                     
        ||  |||||||||||         | ||||||||||| |||||                    |||||   |      |||||                                                                                                                                                     A
        GT  CCGCCTGGGTT         G TCCTCCCCGAA TCGAG                    GGGAA   G      GTAAT                                                                                                                                                     
CTATTCTC  AC           --AATTCCG G           A     --------------------     CCC ------     TTAAAAGAAAATTTAAATGGGGTTCGGGGAATACTTTTCAATCTATTTACTTAAACCTGTGTAAAAAATATATAATTTTCTGAACATCAAGTTACCATTCTCACGATAAATTACCAAAGTTTTGGAACCAAGTTTAGGGTAATCGGTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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