SE3320476

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7941
  • citrus sinensis
  • SE3320476
  • Mutator
  • M58
  • chr2:19245633-19246304
  • TAATAACTT
  • GGG

Secondary structure and sequence

TSD    TIR
5'



3'
TAATAACTT   AGAA    GTG         C    --C    CA    AC C   A       AAAATTATAACACTCTTAAATT     C         --      AACTAG       A           ACA   AAA CCTCATAAAACTAAACCCAACTCCTCGAAGTCGGGTAAATGGTTGAGAATACTCGACTTCAACCAAACCATACACAATTAGTAATTCAGCATAAATTCTCGACTTTTTCATGTTAGTCAGGTAAATAGTCGAGAATACTCGGCTTCAATTGAAATAAAAAATTATCTGAAAAATTCTCAATTTTTTCAAGTAAGTCGAGTAAAGAGTCG
         GGG    TTGT   GGATGTACC CATT   CCTT  AAAT  C AAT TATACCT                      TTACA ATATATACT  CTAAAA      AGAAAGT CAAAAATAACC   ACT   T                                                                                                                                                                                                                 
         |||    ||||   ||||||||| ||||   ||||  ||||  | ||| |||||||                      ||||| |||||||||  ||||||      ||||||| |||||||||||   |||   |                                                                                                                                                                                                                  
         CCC    AATA   TTTATATGG GTAA   GGAA  TTTA  G TTA ATATGGG                      AATGT TATATATGG  GATTTT      TTTTTCA GTTTTTATTGG   ATT   T                                                                                                                                                                                                                 
TTCAATAAT   AAAA    -AA         A    ACA    --    CA T   G       --------------------GT     A         AG      --CACA       -           ---   --- TTTTAATAGATAAATGGAAATGAAGGAGAGAGTACTGAAGATGTATTGGTTTCAGCTCATATGAGCTGAAAAATGGACTGAATTAATTTTGCTTTTAAAAATAAAGTTAAATTCAGCTCATAAGAGTTGGTTAATGGCTTGAAGTTACTTTTCAGTTTTTAAAAACGACTTACTTATAACCCATTCCAATTTAATTTCAGCCCATAAGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End