SE3320478

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7943
  • citrus sinensis
  • SE3320478
  • Mutator
  • M69
  • chr1:11049587-11049783
  • CTAATTTTT
  • GGATTGAGATCCTCTCTTGATTTGA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTAATTTTT      A                  GCAC    G    TTTA  GATCT     CACCT    -T  A  -            TTTATATTTAAC
         GGATTG GATCCTCTCTTGATTTGA    TCTT ATCT    CA     TGTGC     GTAT  TT GT ATTAATGAATGG            
         |||||| ||||||||||||||||||    |||| ||||    ||     |||||     ||||  || || ||||||||||||            T
         CCTAGT CTAGGAGAGGACTAGACT    AGAA TAGA    GT     ACACG     CATA  AA CA TAATTATTTACT            
TTTTTAATC      C                  ----    A    -TTC  -----     ATAAT    CT  C  C            TTTTCTTTTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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