Plant MITE

SE3320479

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7944
citrus sinensis
SE3320479
Mutator
M60
chr4:14218725-14218870
ATTAATTTA
ATTAATTTAGGGAGTCTCTAAGTTACATTTAATGTAACATACACAACTCATCTCAACCACATGAATTGCGGGTCCCATAATTTTATGTGGTTGAGATGAATTGTGTAAGTTACATTGAATGTAACTTAGCACTTGCCATTAAT

Secondary structure and sequence

TSD TIR

5'

3'

         TTA G    CT                     A       C                  -   C  G
   ATTAAT   G GAGT  CTAAGTTACATTTAATGTAAC TACACAA TCATCTCAACCACATGAA TTG GG 
   ||||||   | ||||  ||||||||||||||||||||| ||||||| |||||||||||||||||| ||| || T
   TAATTA   C TTCA  GATTCAATGTAAGTTACATTG ATGTGTT AGTAGAGTTGGTGTATTT AAT CC 
ATT      --C G    -C                     A       A                  T   A  C

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE3320479

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE3320479